PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000759G0450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 25696.4 Da    PI: 9.5834
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000759G0450genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.44.4e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien + rqvtfskRrng+lKKA+ELSvLCdaeva+++fs++gkly ++s
  PH01000759G0450  9 KRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALVVFSPRGKLYNFAS 59
                     79***********************************************86 PP

2K-box69.11.4e-2379171899
            K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                      s + +++ e+ + +++ L k++e L+  +R+llGe+Le++s++eL++Le +Leksl +iR +K++ll eq+ +l++ke  l ++n++Lr k +
  PH01000759G0450  79 SkTVQQDIEQVKADAEGLAKKLEALEGYKRKLLGEKLEECSIEELHSLEVKLEKSLHSIRGRKTQLLEEQVTKLRQKEMTLLKDNEDLRGKCK 171
                      2356778999*******************************************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.2E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.16161IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.96E-32383IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-30323IPR002100Transcription factor, MADS-box
CDDcd002653.29E-42375No hitNo description
PfamPF003195.5E-271057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2483170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.09586176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000060Biological Processprotein import into nucleus, translocation
GO:0009409Biological Processresponse to cold
GO:0009739Biological Processresponse to gibberellin
GO:0009911Biological Processpositive regulation of flower development
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRGKTQMKR IENPTSRQVT FSKRRNGLLK KAFELSVLCD AEVALVVFSP RGKLYNFASA  60
SMQKTIERYR TYAKDNISSK TVQQDIEQVK ADAEGLAKKL EALEGYKRKL LGEKLEECSI  120
EELHSLEVKL EKSLHSIRGR KTQLLEEQVT KLRQKEMTLL KDNEDLRGKC KNQLTLVTSA  180
PMTVAAQDEN PDQNNDHMDV ETELIIGLPG RHRSDKATTD NRANHA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-19372271Myocyte-specific enhancer factor 2A
3kov_B2e-19372271Myocyte-specific enhancer factor 2A
3kov_I2e-19372271Myocyte-specific enhancer factor 2A
3kov_J2e-19372271Myocyte-specific enhancer factor 2A
3mu6_A8e-20372271Myocyte-specific enhancer factor 2A
3mu6_B8e-20372271Myocyte-specific enhancer factor 2A
3mu6_C8e-20372271Myocyte-specific enhancer factor 2A
3mu6_D8e-20372271Myocyte-specific enhancer factor 2A
3p57_A2e-19372271Myocyte-specific enhancer factor 2A
3p57_B2e-19372271Myocyte-specific enhancer factor 2A
3p57_C2e-19372271Myocyte-specific enhancer factor 2A
3p57_D2e-19372271Myocyte-specific enhancer factor 2A
3p57_I2e-19372271Myocyte-specific enhancer factor 2A
3p57_J2e-19372271Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00076ChIP-chipTransfer from AT2G45660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0935540.0FP093554.1 Phyllostachys edulis cDNA clone: bphylf035j16, full insert sequence.
GenBankFP0945150.0FP094515.1 Phyllostachys edulis cDNA clone: bphylf061m06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630979.11e-127PREDICTED: MADS-box transcription factor 50
SwissprotQ9XJ601e-129MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLA0A0D9Z1D41e-126A0A0D9Z1D4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CUE01e-126A0A0E0CUE0_9ORYZ; Uncharacterized protein
STRINGORGLA03G0015400.11e-125(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14133379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.16e-72AGAMOUS-like 20